Lollipops - Protein Variant Visualization tool

Lollipops - Variant visualization tool

This tool is also available as a command-line program that may be incorporated into your own pipelines. Open source at https://github.com/pbnjay/lollipops.

Gene to Annotate: : Variants: variant format

Currently only point mutations are supported, and may be specified as:

	<AMINO><CODON><AMINO><#COLOR><@COUNT>

Only CODON is required, and AMINO tags are not parsed.

Synonymous mutations are denoted if the first AMINO tag matches the second
AMINO tag, or if the second tag is not present. Otherwise the non-synonymous
mutation color is used. The COLOR tag will override using the #RRGGBB style
provided. The COUNT tag can be used to scale the lollipop marker size so that
the area is exponentially proportional to the count indicated. Examples:

	R273C            -- non-synonymous mutation at codon 273
	T125@5           -- synonymous mutation at codon 125 with "5x" marker sizing
	R248Q#00ff00     -- green lollipop at codon 248
	R248Q#00ff00@131 -- green lollipop at codon 248 with "131x" marker sizing

Separate multiple variants with a space, or place them on separate lines.

Show Legend Show Lollipop Labels

Citation:

Jay JJ, Brouwer C (2016) Lollipops in the Clinic: Information Dense Mutation Plots for Precision Medicine. PLoS ONE 11(8): e0160519. doi: 10.1371/journal.pone.0160519.