RW Reid, JW Ferrier, JJ Jay (2020).
Automated Gene Data Integration with Databio .
BMC Research Notes. PMID 32238171
bioRxiv .
PJ Maughan, R Lee, RN Walstead, RJ Vickerstaff, MC Fogarty, CR Brouwer, RR Reid, JJ Jay, WA Bekele, EW Jackson, NA Tinker,
T Langdon, JA Schlueter, EN Jellen (2019).
Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species .
BMC Biology. PMID 31757219
JJ Jay, A Sanders, RW Reid, CR Brouwer (2018).
Connecting nutrition composition measures to biomedical research .
BMC Research Notes. PMID 30541615
JJ Jay, C Brouwer (2016).
Lollipops in the clinic: information dense
mutation plots for precision medicine .
PLoS ONE. PMID 27490490
GitHub
DA Janies, Z Witter, GV Linchangco, DW Foltz, AK Miller, AM Kerr, JJ Jay, RW Reid, GA Wray (2016).
EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms .
BMC Bioinformatics. PMID 26800861
AS Chaffin, Y-F Huang, S Smith, WA Bekele, E Babiker, BN Gnanesh, BJ Foresman, SG Blanchard, JJ Jay, RW Reid, CP Wight, S Chao, R Oliver, E Islamovic, FL Kolb, C McCartney, JW Mitchell Fetch, AD Beattie, Å Bjørnstad, JM
Bonman, T Langdon, CJ Howarth, CR Brouwer, EN Jellen, KE Klos, JA Poland, TF Hsieh, R Brown, E Jackson, JA
Schlueter, NA Tinker (2016).
A consensus map in cultivated hexaploid
oat reveals conserved grass synteny with substantial subgenome rearrangement .
The plant genome. PMID 27898818
JA Bubier, TD Wilcox, JJ Jay, MA Langston, EJ Baker, EJ Chesler (2016).
Cross-species integrative functional
genomics in GeneWeaver reveals a role for Pafah1b1 in altered response to alcohol .
Frontiers in behavioral neuroscience. PMID 26834590
JJ Jay, EJ Chesler (2014).
Performing integrative functional genomics analysis in GeneWeaver.org .
Gene Function Analysis. PMID 24233775
JA Bubier, JJ Jay, CL Baker, SE Bergeson, H Ohno, P Metten, JC Crabbe, EJ Chesler (2014).
Identification of a QTL in Mus musculus
for Alcohol Preference, Withdrawal and Ap3m2 Expression Using Integrative Functional Genomics and Precision
Genetics .
Genetics. PMID 24923803
JJ Jay (2013).
Contextual Analysis of Large-Scale
Biomedical Associations for the Elucidation and Prioritization of Genes and their Roles in Complex Disease .
PhD Dissertation.
RW Logan, RF Robledo, JM Recla, VM Philip, JA Bubier, JJ Jay, C Harwood, T Wilcox, DM Gatti, CJ Bult (2013).
High‐precision genetic mapping of
behavioral traits in the diversity outbred mouse population .
Genes, Brain and Behavior. PMID 23433259
JJ Jay, EJ Baker, EJ Chesler (2013).
A Context-Driven Gene Prioritization Method for Web-Based Functional Genomics .
ISBRA 2013: Bioinformatics Research and Applications.
CA Phillips, JJ Jay, EJ Baker, EJ Chesler, MA Langston (2012).
On Bipartite Graph Decomposition in
the Presence of Noise, with Applications to Biological Data Clustering .
11th Cologne-Twente Workshop on Graphs and Combinatorial Optimization.
JJ Jay (2012).
Cross species integration of functional genomics experiments .
International Review of Neurobiology. PMID 23195309
TF Meehan, CJ Carr, JJ Jay, CJ Bult, EJ Chesler, JA Blake (2011).
Autism candidate genes via mouse phenomics .
Journal of biomedical informatics. PMID 21397722
EJ Baker, JJ Jay, JA Bubier, MA Langston, EJ Chesler (2011).
GeneWeaver: a web-based system for
integrative functional genomics .
Nucleic Acids Research. PMID 22080549
JJ Jay, JD Eblen, Y Zhang, M Benson, AD Perkins, AM Saxton, BH Voy, EJ Chesler, MA Langston (2011).
A systematic comparison of genome scale
clustering algorithms .
7th International Symposium on Bioinformatics Research and Applications (ISBRA’11).
PMID 22759431
RM Adams, JB Harris, JJ Jay, BG Johnson, ML Land, LJ Hauser (2010).
Developing measures for microbial genome
assembly quality control .
BMC bioinformatics.
EJ Baker, JJ Jay, VM Philip, Y Zhang, Z Li, R Kirova, MA Langston, EJ Chesler (2009).
Ontological discovery environment: A system for integrating gene–phenotype associations .
Genomics. PMID 19733230